I want to track the flows my users take through the bot, and botpress already does this in the logs. Anyway I can tap into that?

you mean something like this https://github.com/devguilhermy/botpress-inbox ?

This kind of allows me to work as a human in the loop, right?

only to check what users wrote. Atm I use this to check users input and improve chatbot for client.

that looks useful thank you, is there also a way to track the name of the nodes that are being "hit"?

I think you can do it, but only if user gives you name or email and than you asociate that name or email with chatuserid or something like this. I am not yet there, myself.